[bug#36796,07/11] gnu: Add r-flowmeans.
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Message ID 20190724182204.6818-8-zimon.toutoune@gmail.com
State Accepted
Headers show
Series
  • Add r packages to process flow cytometry data
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Commit Message

zimoun July 24, 2019, 6:22 p.m. UTC
* gnu/packages/bioconductor.scm (r-flowmeans): New variable.
---
 gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

Patch
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diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d5bd512972..0f023665c2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4881,3 +4881,29 @@  and to both short and long sequence reads.")
     (description
       "Provides S4 data structures and basic functions to deal with flow cytometry data.")
     (license license:artistic2.0)))
+
+(define-public r-flowmeans
+  (package
+    (name "r-flowmeans")
+    (version "1.44.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (bioconductor-uri "flowMeans" version))
+        (sha256
+          (base32
+            "0yp6y3mq5h4nf1d7ybqnriigwfmwanrqavpj3ry482sgiaip1hp2"))))
+    (properties `((upstream-name . "flowMeans")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-biobase" ,r-biobase)
+        ("r-feature" ,r-feature)
+        ("r-flowcore" ,r-flowcore)
+        ("r-rrcov" ,r-rrcov)))
+    (home-page
+      "https://bioconductor.org/packages/flowMeans")
+    (synopsis
+      "Non-parametric Flow Cytometry Data Gating")
+    (description
+      "Identifies cell populations in Flow Cytometry data using non-parametric clustering and segmented-regression-based change point detection.  Note: R 2.11.0 or newer is required.")
+    (license license:artistic2.0)))