[bug#43400,12/12] gnu: r-fithic: Move to (gnu packages bioconductor).
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Message ID 20200914160747.8983-11-zimon.toutoune@gmail.com
State New
Headers show
Series
  • Move some BioConductor to (gnu packages bioconductor)
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Commit Message

zimoun Sept. 14, 2020, 4:07 p.m. UTC
* gnu/packages/bioinformatics.scm (r-fithic): Move from here...
* gnu/packages/bioconductor.scm (r-fithic): ...to here.
---
 gnu/packages/bioconductor.scm   | 26 ++++++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 26 --------------------------
 2 files changed, 26 insertions(+), 26 deletions(-)

Patch
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diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 5878c43a3d..9473f3a286 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8337,6 +8337,32 @@  routines.")
 objects from the @code{graph} package.")
     (license license:epl1.0)))
 
+(define-public r-fithic
+  (package
+    (name "r-fithic")
+    (version "1.14.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "FitHiC" version))
+              (sha256
+               (base32
+                "1dffkdxm08wq4kjd9j2v2625x3p6vbrk33a2zx94pwpgkghr72yp"))))
+    (properties `((upstream-name . "FitHiC")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-data-table" ,r-data-table)
+       ("r-fdrtool" ,r-fdrtool)
+       ("r-rcpp" ,r-rcpp)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://bioconductor.org/packages/FitHiC")
+    (synopsis "Confidence estimation for intra-chromosomal contact maps")
+    (description
+     "Fit-Hi-C is a tool for assigning statistical confidence estimates to
+intra-chromosomal contact maps produced by genome-wide genome architecture
+assays such as Hi-C.")
+    (license license:gpl2+)))
+
 (define-public r-hitc
   (package
     (name "r-hitc")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6bbcc3fe00..71369affaf 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10599,32 +10599,6 @@  EMBL-EBI GWAS catalog.")
 visualizations for publication-quality multi-panel figures.")
     (license license:gpl2+)))
 
-(define-public r-fithic
-  (package
-    (name "r-fithic")
-    (version "1.14.0")
-    (source (origin
-              (method url-fetch)
-              (uri (bioconductor-uri "FitHiC" version))
-              (sha256
-               (base32
-                "1dffkdxm08wq4kjd9j2v2625x3p6vbrk33a2zx94pwpgkghr72yp"))))
-    (properties `((upstream-name . "FitHiC")))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-data-table" ,r-data-table)
-       ("r-fdrtool" ,r-fdrtool)
-       ("r-rcpp" ,r-rcpp)))
-    (native-inputs
-     `(("r-knitr" ,r-knitr)))
-    (home-page "https://bioconductor.org/packages/FitHiC")
-    (synopsis "Confidence estimation for intra-chromosomal contact maps")
-    (description
-     "Fit-Hi-C is a tool for assigning statistical confidence estimates to
-intra-chromosomal contact maps produced by genome-wide genome architecture
-assays such as Hi-C.")
-    (license license:gpl2+)))
-
 (define-public r-dropbead
   (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
         (revision "2"))