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[bug#45699] gnu: python-scipy: Update to 1.6.0.

Message ID CA+3U0ZnxheAHO4j_16f_yXKa-Rci3njOYZuAEzv_hXL8hN3YMQ@mail.gmail.com
State New
Headers show
Series [bug#45699] gnu: python-scipy: Update to 1.6.0. | expand

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Commit Message

Greg Hogan Jan. 6, 2021, 6:47 p.m. UTC
From d03cf7fcf8351827dcf5d1a342c26bc5ffee7046 Mon Sep 17 00:00:00 2001
From: Greg Hogan <code@greghogan.com>
Date: Tue, 5 Jan 2021 17:09:15 +0000
Subject: [PATCH] gnu: python-scipy: Update to 1.6.0.

* gnu/packages/python-xyz.scm (python-scipy): Update to 1.6.0.
[inputs]: Add pybind11.
[arguments]<#:phases>['change-home-dir]: New phase.
---
 gnu/packages/python-science.scm | 13 ++++++++++---
 1 file changed, 10 insertions(+), 3 deletions(-)

"scipy/sparse/linalg/dsolve/tests/test_linsolve.py"
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Patch

diff --git a/gnu/packages/python-science.scm
b/gnu/packages/python-science.scm
index 99903ef247..a1e2b57669 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -10,6 +10,7 @@ 
 ;;; Copyright © 2019 Giacomo Leidi <goodoldpaul@autistici.org>
 ;;; Copyright © 2020 Pierre Langlois <pierre.langlois@gmx.com>
 ;;; Copyright © 2020 Vinicius Monego <monego@posteo.net>
+;;; Copyright © 2021 Greg Hogan <code@greghogan.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -50,13 +51,13 @@ 
 (define-public python-scipy
   (package
     (name "python-scipy")
-    (version "1.3.2")
+    (version "1.6.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "scipy" version))
        (sha256
-        (base32 "192d8dsybvhv19igkrsafbdafx198nz7pibkjgrqjhlr66s3jfd0"))))
+        (base32 "0rh5b1rwdcvvagld8vpxnpaibszy1skpx39a0fwzd5gx5pwcjvfb"))))
     (build-system python-build-system)
     (propagated-inputs
      `(("python-numpy" ,python-numpy)
@@ -64,7 +65,8 @@ 
        ("python-pyparsing" ,python-pyparsing)))
     (inputs
      `(("lapack" ,lapack)
-       ("openblas" ,openblas)))
+       ("openblas" ,openblas)
+       ("pybind11" ,pybind11)))
     (native-inputs
      `(("python-cython" ,python-cython)
        ("python-pytest" ,python-pytest)
@@ -77,6 +79,11 @@ 
     (arguments
      `(#:phases
        (modify-phases %standard-phases
+         (add-before 'build 'change-home-dir
+           (lambda _
+             ;; Change from /homeless-shelter to /tmp for write permission.
+             (setenv "HOME" "/tmp")
+             #t))
          (add-after 'unpack 'disable-broken-tests
            (lambda _
              (substitute*